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1

QTL mapping designs for aquaculture

Cécile Massault, Henk Bovenhuis, Chris Haley, Dirk-Jan de Koning

Journal:

Year:

2008

Language:

english

File:

PDF, 489 KB

english, 2008

2

Genomewide association study to detect QTL for twinning rate in Baluchi sheep

GHOLIZADEH, MOHSEN, RAHIMI-MIANJI, GHODRAT, NEJATI-JAVAREMI, ARDESHIR, DE KONING, DIRK JAN, JONAS, ELISABETH

Journal:

Journal of Genetics

Year:

2014

Language:

english

File:

PDF, 3.25 MB

english, 2014

3

Breeding for public health: A strategy

Hansson, Sven Ove, Åman, Per, Becker, Wulf, De Koning, Dirk-Jan, Lagerkvist, Carl Johan, Larsson, Ingrid, Lehrman, Anna, Risérus, Ulf, Stymne, Sten

Journal:

Trends in Food Science & Technology

Year:

2018

Language:

english

File:

PDF, 2.31 MB

english, 2018

4

Removal of alleles by genome editing (RAGE) against deleterious load

Johnsson, Martin, Gaynor, R. Chris, Jenko, Janez, Gorjanc, Gregor, de Koning, Dirk-Jan, Hickey, John M.

Journal:

Genetics Selection Evolution

Year:

2019

Language:

english

File:

PDF, 3.17 MB

english, 2019

5

Molecular mapping and identification of quantitative trait loci for domestication traits in the field cress (Lepidium campestre L.) genome

Desta, Zeratsion Abera, de Koning, Dirk-Jan, Ortiz, Rodomiro

Journal:

Year:

2020

Language:

english

File:

PDF, 2.82 MB

english, 2020

6

A note on permutation tests for genetic association analysis of quantitative traits when variances are heterogeneous

Danielle Posthuma, Dirk-Jan de Koning, Conor Dolan, Michael E. Goddard, Peter M. Visscher

Journal:

Genetic Epidemiology

Year:

2009

Language:

english

File:

PDF, 220 KB

english, 2009

7

Genomic selection for QTL-MAS data using a trait-specific relationship matrix

Zhe Zhang, XiangDong Ding, JianFeng Liu, Dirk-Jan de Koning, Qin Zhang

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 379 KB

english, 2011

8

Association analyses of the MAS-QTL data set using grammar, principal components and Bayesian network methodologies

Burak Karacaören, Tomi Silander, José M Álvarez-Castro, Chris S Haley, Dirk Jan de Koning

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 345 KB

english, 2011

9

A quantitative trait locus for live weight maps to bovine Chromosome 23

Kari T. Elo, Johanna Vilkki, Dirk-Jan de Koning, Riikka J. Velmala, Asko V. Mäki-Tanila

Journal:

Mammalian Genome

Year:

1999

Language:

english

File:

PDF, 279 KB

english, 1999

10

Livestock genomics: bridging the gap between mice and men

Dirk-Jan de Koning, Alan Archibald, Chris S. Haley

Journal:

Trends in Biotechnology

Year:

2007

Language:

english

File:

PDF, 450 KB

english, 2007

11

Genetical genomics in humans and model organisms

Dirk-Jan de Koning, Chris S. Haley

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 106 KB

english, 2005

12

Conflicting candidates for cattle QTLs

Dirk-Jan de Koning

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 106 KB

english, 2006

13

Towards in vitro genetics

Chris S. Haley, Dirk-Jan de Koning

Journal:

Trends in Genetics

Year:

2007

Language:

english

File:

PDF, 485 KB

english, 2007

14

The efficiency of mapping of quantitative trait loci using cofactor analysis in half-sib design

Goutam Sahana, Dirk Jan de Koning, Bernt Guldbrandtsen, Peter Sørensen, Mogens Sandø Lund

Journal:

Genetics Selection Evolution

Year:

2006

Language:

english

File:

PDF, 124 KB

english, 2006

15

A region on chicken chromosome 2 affects both egg white thinning and egg weight

Mervi Honkatukia, Maria Tuiskula-Haavisto, Dirk-Jan De Koning, Anneli Virta, Asko Mäki-Tanila, Johanna Vilkki

Journal:

Genetics Selection Evolution

Year:

2005

Language:

english

File:

PDF, 208 KB

english, 2005

16

The EADGENE Microarray Data Analysis Workshop (Open Access publication)

Dirk-Jan de Koning, Florence Jaffrézic, Mogens Sandø Lund, Michael Watson, Caroline Channing, Ina Hulsegge, Marco H Pool, Bart Buitenhuis, Jakob Hedegaard, Henrik Hornshøj, Li Jiang, Peter Sørensen, G

Journal:

Genetics Selection Evolution

Year:

2007

Language:

english

File:

PDF, 102 KB

english, 2007

17

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication)

Florence Jaffrézic, Dirk-Jan de Koning, Paul J Boettcher, Agnès Bonnet, Bart Buitenhuis, Rodrigue Closset, Sébastien Déjean, Céline Delmas, Johanne C Detilleux, Peter Dovč, Mylène Duval, Jean-Louis Fo

Journal:

Genetics Selection Evolution

Year:

2007

Language:

english

File:

PDF, 744 KB

english, 2007

18

Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology

Suzanne J Rowe, Ricardo Pong-Wong, Christopher S Haley, Sara A Knott, Dirk-Jan De Koning

Journal:

Genetics Selection Evolution

Year:

2009

Language:

english

File:

PDF, 632 KB

english, 2009

19

Estimates of heritability and genetic correlation for body length and resistance to fish pasteurellosis in the gilthead sea bream (Sparus aurata L.)

Jenny Antonello, Cécile Massault, Rafaella Franch, Chris Haley, Caterina Pellizzari, Giuseppe Bovo, Tomaso Patarnello, Dirk-Jan de Koning, Luca Bargelloni

Journal:

Year:

2009

Language:

english

File:

PDF, 339 KB

english, 2009

20

QTL affecting morphometric traits and stress response in the gilthead seabream (Sparus aurata)

Kay Boulton, Cecile Massault, Ross D. Houston, Dirk Jan de Koning, Chris S. Haley, Henk Bovenhuis, Costas Batargias, Adelino V.M. Canario, Giorgios Kotoulas, Costas S. Tsigenopoulos

Journal:

Year:

2011

Language:

english

File:

PDF, 618 KB

english, 2011

21

Shift in chicken intestinal gene association networks after infection with Salmonella

Dirkjan Schokker, Dirk-Jan de Koning, Johanna M.J. Rebel, Mari A. Smits

Journal:

Comparative Biochemistry and Physiology Part D: Genomics and Proteomics

Year:

2011

Language:

english

File:

PDF, 465 KB

english, 2011

22

The genetic dissection of immune response using gene-expression studies and genome mapping

Dirk-Jan de Koning, Örjan Carlborg, Chris S. Haley

Journal:

Veterinary Immunology and Immunopathology

Year:

2005

Language:

english

File:

PDF, 354 KB

english, 2005

23

Heritability of cortisol response to confinement stress in European sea bassdicentrarchus labrax

Filip AM Volckaert, Bart Hellemans, Costas Batargias, Bruno Louro, Cécile Massault, Jeroen KJ Van Houdt, Chris Haley, Dirk-Jan de Koning, Adelino VM Canario

Journal:

Genetics Selection Evolution

Year:

2012

Language:

english

File:

PDF, 241 KB

english, 2012

24

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes ( Open Access publication )

Jaffrézic, Florence, de Koning, Dirk-Jan, Boettcher, Paul J., Bonnet, Agnès, Buitenhuis, Bart, Closset, Rodrigue, Déjean, Sébastien, Delmas, Céline, Detilleux, Johanne C., Dovč, Peter, Duval, Mylène,

Journal:

Genetics Selection Evolution

Year:

2007

Language:

english

File:

PDF, 283 KB

english, 2007

25

Does genomic selection have a future in plant breeding?

Jonas, Elisabeth, de Koning, Dirk-Jan

Journal:

Trends in Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

26

Analysis of the genetics of boar taint reveals both single SNPs and regional effects

Rowe, Suzanne J, Karacaören, Burak, de Koning, Dirk-Jan, Lukic, Boris, Hastings-Clark, Nicola, Velander, Ingela, Haley, Chris S, Archibald, Alan L

Journal:

Year:

2014

Language:

english

File:

PDF, 544 KB

english, 2014

27

Predicting heterosis for egg production traits in crossbred offspring of individual White Leghorn sires using genome-wide SNP data

Amuzu-Aweh, Esinam N, Bovenhuis, Henk, de Koning, Dirk-Jan, Bijma, Piter

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 512 KB

english, 2015

28

Genomic selection needs to be carefully assessed to meet specific requirements in livestock breeding programs

Jonas, Elisabeth, Koning, Dirk-Jan de

Journal:

Frontiers in Genetics

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

29

The EADGENE and SABRE post-analyses workshop

Jaffrezic, Florence, Hedegaard, Jakob, SanCristobal, Magali, Klopp, Christophe, de Koning, Dirk-Jan

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 223 KB

english, 2009

30

Co-culturing human islets with proangiogenic support cells to improve islet revascularization at the subcutaneous transplantation site

Buitinga, Mijke, Janeczek Portalska, Karolina, Cornelissen, Dirk-Jan, Plass, Jacqueline, Hanegraaf, Maaike, Carlotti, Francoise, de Koning, Eelco, Engelse, Marten A., van Blitterswijk, Clemens, Karper

Journal:

Tissue Engineering Part A

Year:

2016

Language:

english

File:

PDF, 1.21 MB

english, 2016

31

Characterization and refinement of growth related quantitative trait loci in European sea bass (Dicentrarchus labrax) using a comparative approach

Louro, Bruno, Kuhl, Heiner, Tine, Mbaye, de Koning, Dirk-Jan, Batargias, Costas, Volckaert, Filip A.M., Reinhardt, Richard, Canario, Adelino V.M., Power, Deborah M.

Journal:

Year:

2016

Language:

english

File:

PDF, 859 KB

english, 2016

32

Detecting dominant QTL with variance component analysis in simulated pedigrees

ROWE, SUZANNE J., RICARDO, PONG-WONG, HALEY, CHRISTOPHER S., KNOTT, SARA A., KONING, DIRK-JAN DE

Journal:

Genetics Research

Year:

2008

Language:

english

File:

PDF, 167 KB

english, 2008

33

Goals and hurdles for a successful implementation of genomic selection in breeding programme for selected annual and perennial crops

Jonas, Elisabeth, de Koning, Dirk Jan

Journal:

Biotechnology and Genetic Engineering Reviews

Year:

2016

Language:

english

File:

PDF, 1.47 MB

english, 2016

34

Quantitative trait loci with parent-of-origin effects in chicken

TUISKULA-HAAVISTO, MARIA, DE KONING, DIRK-JAN, HONKATUKIA, MERVI, SCHULMAN, NINA F., MÄKI-TANILA, ASKO, VILKKI, JOHANNA

Journal:

Genetics Research

Year:

2004

Language:

english

File:

PDF, 402 KB

english, 2004

35

A 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle

Sahana, Goutam, Iso-Touru, Terhi, Wu, Xiaoping, Nielsen, Ulrik Sander, de Koning, Dirk-Jan, Lund, Mogens Sandø, Vilkki, Johanna, Guldbrandtsen, Bernt

Journal:

Genetics Selection Evolution

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

36

Short communication: Imputation of markers on the bovine X chromosome

Mao, Xiaowei, Johansson, Anna Maria, Sahana, Goutam, Guldbrandtsen, Bernt, De Koning, Dirk-Jan

Journal:

Journal of Dairy Science

Year:

2016

Language:

english

File:

PDF, 406 KB

english, 2016

37

Identification of novel candidate genes for the inverted teat defect in sows using a genome-wide marker panel

Chalkias, Helena, Jonas, Elisabeth, Andersson, Lisa S., Jacobson, Magdalena, de Koning, Dirk Jan, Lundeheim, Nils, Lindgren, Gabriella

Journal:

Journal of Applied Genetics

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

38

Back to the Future: Multiparent Populations Provide the Key to Unlocking the Genetic Basis of Complex Traits

de Koning, Dirk-Jan, McIntyre, Lauren M.

Journal:

Year:

2017

Language:

english

File:

PDF, 450 KB

english, 2017

39

Comparison of analyses of the QTLMAS XII common dataset. I: Genomic selection

Mogens Sandø Lund,Goutam Sahana,Dirk-Jan de Koning,Guosheng Su…

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 325 KB

english, 2009

40

Comparison of analyses of the QTLMAS XII common dataset. II: genome-wide association and fine mapping

Lucy Crooks,Goutam Sahana,Dirk-Jan de Koning,Mogens Sandø Lund…

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 348 KB

english, 2009

41

A combined strategy for quantitative trait loci detection by genome-wide association

Alex C Lam,Joseph Powell,Wen-Hua Wei,Dirk-Jan de Koning…

Journal:

BMC Proceedings

Year:

2009

Language:

english

File:

PDF, 794 KB

english, 2009

42

Rapid and robust association mapping of expression quantitative trait loci

Lam, Alex C, Schouten, Michael, Aulchenko, Yurii S, Haley, Chris S, de Koning, Dirk-Jan

Journal:

BMC Proceedings

Year:

2007

Language:

english

File:

PDF, 550 KB

english, 2007

43

Transcriptional profile of breast muscle in heat stressed layers is similar to that of broiler chickens at control temperature

Zahoor, Imran, de Koning, Dirk-Jan, Hocking, Paul M.

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 1.03 MB

english, 2017

44

Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle

Mesbah-Uddin, Md, Guldbrandtsen, Bernt, Iso-Touru, Terhi, Vilkki, Johanna, De Koning, Dirk-Jan, Boichard, Didier, Lund, Mogens Sandø, Sahana, Goutam

Journal:

Year:

2018

Language:

english

File:

PDF, 1.08 MB

english, 2018

45

SuperSAGE digital expression analysis of differential growth rate in a European sea bass population

Louro, Bruno, Martins, Rute S.T., Pinto, Patricia I.S., Reinhardt, Richard, de Koning, Dirk-Jan, Canario, Adelino V.M., Power, Deborah M.

Journal:

Aquaculture and Fisheries

Year:

2018

Language:

english

File:

PDF, 1.71 MB

english, 2018

46

Genome Scan for Parent-of-Origin QTL Effects on Bovine Growth and Carcass Traits

Imumorin, Ikhide G., Kim, Eun-Hee, Lee, Yun-Mi, De Koning, Dirk-Jan, van Arendonk, Johan A., De Donato, Marcos, Taylor, Jeremy F., Kim, Jong-Joo

Journal:

Frontiers in Genetics

Year:

2011

Language:

english

File:

PDF, 754 KB

english, 2011

47

Identification of QTL on Chromosome 18 Associated with Non-Coagulating Milk in Swedish Red Cows

Duchemin, Sandrine I., Glantz, Maria, de Koning, Dirk-Jan, Paulsson, Marie, Fikse, Willem F.

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 2.89 MB

english, 2016

48

Genome-Wide Association Study for Susceptibility to and Recoverability From Mastitis in Danish Holstein Cows

Welderufael, B. G., Løvendahl, Peter, de Koning, Dirk-Jan, Janss, Lucas L. G., Fikse, W. F.

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 4.29 MB

english, 2018

49

Application of molecular information in sustainable animal breeding

Koning, Dirk-Jan de

Journal:

Revista Brasileira de Zootecnia

Year:

2008

Language:

english

File:

PDF, 105 KB

english, 2008

50

Back to the Future: Multiparent Populations Provide the Key to Unlocking the Genetic Basis of Complex Traits

de Koning, Dirk-Jan, McIntyre, Lauren M.

Journal:

G3 Genes|Genome|Genetics

Year:

2017

Language:

english

File:

PDF, 529 KB

english, 2017